8Y9K
Crystal structure of the BmCPV1 NSP9 homodimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 82.429, 83.570, 184.409 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.210 - 1.800 |
R-factor | 0.1839 |
Rwork | 0.184 |
R-free | 0.20390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold |
RMSD bond length | 0.006 |
RMSD bond angle | 1.011 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.510 | 5.370 | 1.910 |
High resolution limit [Å] | 1.800 | 3.810 | 1.800 |
Rmerge | 0.095 | 0.054 | 1.355 |
Rmeas | 0.107 | ||
Rpim | 0.049 | ||
Number of reflections | 224824 | 15190 | 36372 |
<I/σ(I)> | 8.42 | 1 | |
Completeness [%] | 98.6 | ||
Redundancy | 8.8 | ||
CC(1/2) | 0.997 | 0.995 | 0.467 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Bis-Tris (pH 8.0) 20% (w/v) polyethylene glycol (PEG) 4000 |