8Y4V
Crystal structure of ferric iron-binding protein (FecB) from Vibrio alginolyticus in complex with citrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-06 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.889, 132.844, 158.974 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.660 - 2.310 |
R-factor | 0.2182 |
Rwork | 0.217 |
R-free | 0.24710 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.486 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | REFMAC |
Refinement software | PHENIX ((1.21rc1_5058: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.660 | 2.370 |
High resolution limit [Å] | 2.310 | 2.310 |
Rmerge | 0.117 | 0.584 |
Rpim | 0.277 | |
Number of reflections | 36899 | 11088 |
<I/σ(I)> | 10.09 | 2.05 |
Completeness [%] | 98.5 | 98.6 |
Redundancy | 3.47 | 3.52 |
CC(1/2) | 0.993 | 0.703 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293.15 | 100 mM NaOAc pH 4.5, 24% w/v Polyethylene glycol 4000 |