8XS2
Crystal structure of Fab fragment of anti-osteocalcin C-terminal peptide antibody KTM219 with addition of fluorophore TAMRA
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE BL-5A |
| Synchrotron site | Photon Factory |
| Beamline | BL-5A |
| Temperature [K] | 95 |
| Detector technology | PIXEL |
| Collection date | 2019-02-23 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 1.000 |
| Spacegroup name | P 21 2 21 |
| Unit cell lengths | 66.185, 69.520, 96.653 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.000 - 2.140 |
| R-factor | 0.20438 |
| Rwork | 0.202 |
| R-free | 0.24426 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5x5x |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.456 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 2.180 |
| High resolution limit [Å] | 2.140 | 5.810 | 2.140 |
| Rmerge | 0.115 | 0.033 | 1.015 |
| Rmeas | 0.120 | 0.035 | 1.060 |
| Rpim | 0.033 | 0.010 | 0.302 |
| Number of reflections | 24972 | 1388 | 1216 |
| <I/σ(I)> | 5.4 | 58.9 | 2.47 |
| Completeness [%] | 99.5 | 99.9 | 98.1 |
| Redundancy | 12.6 | 12 | 11.8 |
| CC(1/2) | 0.999 | 1.000 | 0.815 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.1 M HEPES, 0.3 M Ammonium Acetate, 25% PEG 3350, 0.6 mM TAMRA |






