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8XOD

ThDP-dependent HKA synthase

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL02U1
Synchrotron siteSSRF
BeamlineBL02U1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-16
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97918
Spacegroup nameP 21 21 21
Unit cell lengths95.935, 116.695, 201.610
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.940 - 2.750
Rwork0.203
R-free0.28640
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold
RMSD bond length0.014
RMSD bond angle1.489
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwarePHASER
Refinement softwarePHENIX (1.1.17.3360)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.9402.830
High resolution limit [Å]2.7502.750
Rmerge0.1460.619
Number of reflections595074562
<I/σ(I)>8.9
Completeness [%]99.8
Redundancy9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP28924% polyethlene glycol 400, 0.2 M ammonium acetate, 0.1 M sodium citrate tribasic dihydrate, pH 5.5

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