8XKC
The structure of HLA-A/Pep16
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-09-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979183 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.554, 81.010, 81.596 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.280 - 2.180 |
R-factor | 0.2182 |
Rwork | 0.215 |
R-free | 0.29080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4nqv |
RMSD bond length | 0.008 |
RMSD bond angle | 0.942 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.490 | 6.880 |
High resolution limit [Å] | 2.060 | 2.060 |
Rmerge | 0.176 | |
Rpim | 0.056 | |
Number of reflections | 25558 | 24245 |
<I/σ(I)> | 6.9 | |
Completeness [%] | 99.9 | |
Redundancy | 10.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1M Imidazole, 20%w/v PEG 6000 |