8WZS
Crystal structure of SRCRD11 of human DMBT1 from needle-shape crystal
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-24 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 71.114, 71.114, 55.387 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.180 - 2.540 |
R-factor | 0.17923 |
Rwork | 0.176 |
R-free | 0.24292 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6as5 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.585 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.180 | 7.510 |
High resolution limit [Å] | 2.540 | 2.540 |
Number of reflections | 8237 | 1637 |
<I/σ(I)> | 13.12 | |
Completeness [%] | 99.7 | |
Redundancy | 5.11 | |
CC(1/2) | 0.998 | 0.634 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293.15 | 0.2 M Lithium citrate tribasic tetrahydrate, 25% w/v Polyethylene glycol 3,350 |