8WY3
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor 21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL10U2 |
Synchrotron site | SSRF |
Beamline | BL10U2 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2023-07-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 140.409, 140.409, 134.482 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 121.600 - 2.780 |
R-factor | 0.18797 |
Rwork | 0.186 |
R-free | 0.23360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7wjs |
RMSD bond length | 0.017 |
RMSD bond angle | 1.978 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 134.480 | 2.930 |
High resolution limit [Å] | 2.780 | 2.780 |
Rmerge | 0.224 | 1.289 |
Rmeas | 0.232 | 1.337 |
Rpim | 0.058 | 0.349 |
Total number of observations | 307458 | 41839 |
Number of reflections | 19675 | 2897 |
<I/σ(I)> | 9 | 2.3 |
Completeness [%] | 97.0 | |
Redundancy | 15.6 | 14.4 |
CC(1/2) | 0.996 | 0.858 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277 | 2.0 M Sodium formate, 0.1 M Tris pH 8.5 |