8WXY
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor 23
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL10U2 |
Synchrotron site | SSRF |
Beamline | BL10U2 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2023-07-16 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97918 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 140.323, 140.323, 135.226 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 121.520 - 2.870 |
R-factor | 0.19141 |
Rwork | 0.188 |
R-free | 0.24902 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7wjs |
RMSD bond length | 0.015 |
RMSD bond angle | 1.890 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 121.520 | 3.030 |
High resolution limit [Å] | 2.870 | 2.870 |
Rmerge | 0.255 | 3.221 |
Rmeas | 0.263 | 3.321 |
Rpim | 0.064 | 0.805 |
Total number of observations | 43584 | |
Number of reflections | 17823 | 2630 |
<I/σ(I)> | 11.3 | 2.4 |
Completeness [%] | 96.0 | |
Redundancy | 16.3 | 16.6 |
CC(1/2) | 0.997 | 0.621 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 277 | 1.8 M Sodium phosphate monobasic monohydrate, Potassium phosphate dibasic / pH 6.9 |