Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8W76

Crystal structure of d(CGTATACG)2 duplex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL15A1
Synchrotron siteNSRRC
BeamlineBL15A1
Temperature [K]100
Detector technologyCCD
Collection date2020-10-24
DetectorRAYONIX MX300HE
Wavelength(s)1.0
Spacegroup nameP 41 21 2
Unit cell lengths37.614, 37.614, 77.994
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.070 - 2.710
R-factor0.226
Rwork0.221
R-free0.26800
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.640
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.17.1_3660: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0002.800
High resolution limit [Å]2.7005.8002.700
Rmerge0.0370.123
Rmeas0.0390.129
Rpim0.0130.039
Number of reflections1753211162
<I/σ(I)>25.1
Completeness [%]99.396.8100
Redundancy9.57.810.5
CC(1/2)0.9990.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2931.0mM Oligonucleotides, 50mM Bis-tris (pH 7.0), 20mM sodium chloride, 10mM calcium chloride, 80mM potassium chloride, 7mM manganese(II) chloride tetrahydrate, 10% PEG 2000, 50% Reservior PEG 2000

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon