8W6M
Native strucutre of ferritin from Ureaplasma diversum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | F 4 3 2 |
Unit cell lengths | 179.938, 179.938, 179.938 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.629 - 2.501 |
R-factor | 0.1921 |
Rwork | 0.186 |
R-free | 0.24600 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.800 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.500 | 6.780 | 2.500 |
Rmerge | 0.114 | 0.043 | 0.512 |
Rmeas | 0.116 | 0.044 | 0.520 |
Rpim | 0.020 | 0.008 | 0.091 |
Total number of observations | 304765 | ||
Number of reflections | 9128 | 546 | 450 |
<I/σ(I)> | 7.2 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 33.4 | 28 | 32.1 |
CC(1/2) | 0.993 | 1.000 | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Bicine, MgCl2 |