8VOL
Apex domain deletion mutant of bacteriophage P2 central spike protein, membrane-piercing module
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-15 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.774900 |
Spacegroup name | P 1 |
Unit cell lengths | 45.520, 49.910, 72.930 |
Unit cell angles | 91.61, 88.25, 111.65 |
Refinement procedure
Resolution | 26.730 - 0.900 |
R-factor | 0.1164 |
Rwork | 0.116 |
R-free | 0.12700 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.078 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.730 | 0.930 |
High resolution limit [Å] | 0.900 | 0.900 |
Rmeas | 0.083 | 0.544 |
Number of reflections | 821847 | 55324 |
<I/σ(I)> | 9.69 | 2.07 |
Completeness [%] | 94.5 | 85.9 |
Redundancy | 3.33 | 3.15 |
CC(1/2) | 0.995 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 26-33% Pentaerythritol ethoxylate (15/4 EO/OH) aka PEE-797, 100 mM Bis-Tris or MES pH 6.0-6.5 |