8VDW
X-Ray Crystal Structure of the biotin synthase from V. parvula
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.465, 70.218, 195.850 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.600 - 1.807 |
R-factor | 0.18022 |
Rwork | 0.179 |
R-free | 0.22689 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 2.432 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0415) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.600 | 1.850 |
High resolution limit [Å] | 1.807 | 1.810 |
Rmerge | 0.094 | 0.757 |
Rmeas | 0.102 | 0.827 |
Rpim | 0.039 | 0.328 |
Total number of observations | 26113 | |
Number of reflections | 60902 | 4262 |
<I/σ(I)> | 12.6 | 2 |
Completeness [%] | 99.7 | |
Redundancy | 6.7 | 6.1 |
CC(1/2) | 0.999 | 0.855 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | 0.1M Bis-Tris pH 5.5, 0.2M NH4OAc, 25% PEG 3350 |