8VDH
Human PU.1 ETS-Domain (165-270) Bound to d(AATAGAAGGAAGTGGG) in Ternary Complex with DB2447
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS-II BEAMLINE 17-ID-2 |
| Synchrotron site | NSLS-II |
| Beamline | 17-ID-2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-03-18 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.9201 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 43.049, 61.062, 44.178 |
| Unit cell angles | 90.00, 116.31, 90.00 |
Refinement procedure
| Resolution | 24.180 - 1.640 |
| R-factor | 0.184 |
| Rwork | 0.182 |
| R-free | 0.20760 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.226 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 24.180 | 1.699 |
| High resolution limit [Å] | 1.640 | 1.640 |
| Rmerge | 0.066 | 0.340 |
| Rmeas | 0.076 | 0.348 |
| Rpim | 0.037 | 0.168 |
| Number of reflections | 25020 | 2501 |
| <I/σ(I)> | 11.37 | 2.93 |
| Completeness [%] | 97.2 | 98.84 |
| Redundancy | 4.1 | 4.1 |
| CC(1/2) | 0.997 | 0.970 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 295 | 100mM Sodium Acetate, pH=4.6, 2% PEG3350 |
