8VB5
Crystal structure of kinase domain of HER2 Exon 20 insertion mutant in complex with tucatinib
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 298 |
Detector technology | PIXEL |
Collection date | 2022-10-09 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.979145 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 34.412, 81.699, 94.936 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 61.930 - 1.480 |
R-factor | 0.1469 |
Rwork | 0.145 |
R-free | 0.18700 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 1.297 |
Data reduction software | autoPROC (v1.0.5) |
Data scaling software | Aimless (v0.7.7) |
Phasing software | PHASER (v2.8.3) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.930 | 1.518 |
High resolution limit [Å] | 1.480 | 1.480 |
Rmerge | 0.044 | |
Rmeas | 0.052 | |
Rpim | 0.028 | |
Number of reflections | 43125 | 3076 |
<I/σ(I)> | 18.7 | |
Completeness [%] | 99.7 | |
Redundancy | 6.1 | |
CC(1/2) | 0.999 | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M Bicine pH 8.5, 11% w/v PEG 1500, 0.5mM Tucatinib |