Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8V9V

Yeh-like adhesin YhlD receptor binding domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCMOS
Collection date2018-03-29
DetectorRDI CMOS_8M
Wavelength(s)0.9762
Spacegroup nameI 21 21 21
Unit cell lengths28.302, 104.117, 131.520
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.820 - 2.290
R-factor0.2256
Rwork0.224
R-free0.26310
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.468
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX (1.20.1_4487)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.8202.372
High resolution limit [Å]2.2902.290
Rmerge0.0660.687
Rmeas0.093
Rpim0.066
Number of reflections9217904
<I/σ(I)>9.691.03
Completeness [%]99.9
Redundancy2
CC(1/2)0.9960.515
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29395 mM sodium citrate, pH 5.6, 5% glycerol, 19% PEG4000, 19% isopropanol

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon