8V4P
Crystal structure of Acetyl-CoA synthetase 2 in complex with Adenosine-5'-allylphosphate from Candida albicans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-10-08 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 138.543, 138.543, 543.538 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.510 - 2.300 |
R-factor | 0.2127 |
Rwork | 0.211 |
R-free | 0.23800 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.516 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.21rc1_5162) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.510 | 2.340 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.122 | 2.881 |
Rmeas | 0.125 | 2.950 |
Rpim | 0.028 | 0.632 |
Total number of observations | 2787850 | 142098 |
Number of reflections | 137721 | 6684 |
<I/σ(I)> | 18 | 1.6 |
Completeness [%] | 100.0 | |
Redundancy | 20.2 | 21.3 |
CC(1/2) | 0.999 | 0.812 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | Berkeley B12: 25% (w/v) PEG 3350, 100 mM Hepes free acid/ Sodium hydroxide pH 7.5, 200 mM Ammonium sulfate. CaalA.00629.a.FS11.PD00399 at 20 mg/mL. 2mM Adenosine-5'-allylphosphate added to the protein prior to crystallization. Plate: 13583 well B12 drop 2. Puck: PSL-1611, Cryo: 10% PEG 200 + 90% well. |