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8UWT

A X-ray Crystallographic Structure Model of a Glycoside Hydrolase (GH) Family 39 (GH39)-like Enzyme Encoded within a Xylan Utilization Locus of the pSOL1 Megaplasmid of Clostridium acetobutylicum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-5A
Synchrotron sitePhoton Factory
BeamlineBL-5A
Temperature [K]105
Detector technologyPIXEL
Collection date2018-03-12
DetectorDECTRIS PILATUS3 2M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths75.407, 88.245, 106.593
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.890 - 1.550
R-factor0.14429
Rwork0.142
R-free0.17987
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.539
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.000100.0001.610
High resolution limit [Å]1.5503.3401.550
Rmerge0.1550.0591.530
Rmeas0.1620.0611.720
Rpim0.0470.0170.751
Total number of observations1062381
Number of reflections96886107246167
<I/σ(I)>4.7
Completeness [%]94.399.860.6
Redundancy11133.8
CC(1/2)0.9950.9990.277
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Hampton Research PEGRx HT: Condition 80 (G8): 0.2 M Sodium Formate, 0.1 M BICINE pH 8.5, 20% PEG5000 MME. This condition was extensively refined and the crystal which generated the data for this deposit consisted of the same, but had pH adjusted to 8.3.

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PDB entries from 2025-12-10

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