8UPW
Structure of SARS-Cov2 3CLPro in complex with Compound 34
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-24 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 45.580, 63.380, 105.850 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.880 - 1.440 |
R-factor | 0.1776 |
Rwork | 0.176 |
R-free | 0.20120 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.949 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.880 | 1.460 |
High resolution limit [Å] | 1.440 | 1.440 |
Rmerge | 0.078 | 1.330 |
Rmeas | 0.081 | 1.380 |
Rpim | 0.022 | 0.364 |
Number of reflections | 56250 | 2729 |
<I/σ(I)> | 117.5 | 2.2 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 13.6 | |
CC(1/2) | 0.999 | 0.837 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M Tris pH 9-9.5, 14-18% PEG 8K in a 1:1 ratio of protein to precipitant solution, and cryoprotected with 20% glycerol |