8UP7
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-01-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 72.106, 77.358, 58.202 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.110 - 1.700 |
R-factor | 0.20079 |
Rwork | 0.199 |
R-free | 0.23295 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.586 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.730 |
High resolution limit [Å] | 1.700 | 4.610 | 1.700 |
Rmerge | 0.116 | 0.046 | 1.091 |
Rmeas | 0.121 | 0.049 | 1.160 |
Rpim | 0.036 | 0.016 | 0.377 |
Total number of observations | 386113 | ||
Number of reflections | 34698 | 1563 | 1681 |
<I/σ(I)> | 7.4 | ||
Completeness [%] | 95.0 | 78.5 | 93.1 |
Redundancy | 11.1 | 8.5 | 7.2 |
CC(1/2) | 0.993 | 0.995 | 0.767 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 uL 16 mg/mL protein in 50 mM HEPES, pH 7, 150 mM sodium chloride + 0.2 uL reservoir (Molecular Dimensions Morpheus D9, pH 8.5) |