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8UOU

Structure of atypical asparaginase from Rhodospirillum rubrum in complex with L-Asp

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-01-14
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 21 21 2
Unit cell lengths71.460, 76.126, 55.362
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.970 - 1.350
R-factor0.125
Rwork0.123
R-free0.17000
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.017
RMSD bond angle2.116
Data reduction softwareHKL-2000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0001.370
High resolution limit [Å]1.3503.6601.350
Rmerge0.0730.0500.846
Rmeas0.0760.0520.948
Rpim0.0230.0160.413
Total number of observations715962
Number of reflections6588235532810
<I/σ(I)>15.4
Completeness [%]98.198.185.3
Redundancy10.910.74.7
CC(1/2)0.9940.9950.647
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 uL 19 mg/mL protein in 50 mM HEPES, 150 mM sodium chloride + 0.2 uL reservoir (0.2 M magnesium chloride, 0.1 M HEPES, pH 7.5, 30% v/v PEG400, 20 mM L-Asp)

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PDB entries from 2024-05-15

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