8UOU
Structure of atypical asparaginase from Rhodospirillum rubrum in complex with L-Asp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-01-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 71.460, 76.126, 55.362 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.970 - 1.350 |
R-factor | 0.125 |
Rwork | 0.123 |
R-free | 0.17000 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.017 |
RMSD bond angle | 2.116 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.370 |
High resolution limit [Å] | 1.350 | 3.660 | 1.350 |
Rmerge | 0.073 | 0.050 | 0.846 |
Rmeas | 0.076 | 0.052 | 0.948 |
Rpim | 0.023 | 0.016 | 0.413 |
Total number of observations | 715962 | ||
Number of reflections | 65882 | 3553 | 2810 |
<I/σ(I)> | 15.4 | ||
Completeness [%] | 98.1 | 98.1 | 85.3 |
Redundancy | 10.9 | 10.7 | 4.7 |
CC(1/2) | 0.994 | 0.995 | 0.647 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 uL 19 mg/mL protein in 50 mM HEPES, 150 mM sodium chloride + 0.2 uL reservoir (0.2 M magnesium chloride, 0.1 M HEPES, pH 7.5, 30% v/v PEG400, 20 mM L-Asp) |