8UHZ
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with Mn2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-10-28 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 62.627, 65.012, 166.633 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.660 - 2.550 |
R-factor | 0.1845 |
Rwork | 0.180 |
R-free | 0.22870 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.537 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.610 |
High resolution limit [Å] | 2.550 | 2.570 |
Rmerge | 0.169 | 0.802 |
Rmeas | 0.182 | |
Rpim | 0.066 | 0.458 |
Number of reflections | 22636 | 1082 |
<I/σ(I)> | 11.3 | 1.6 |
Completeness [%] | 99.8 | |
Redundancy | 7.2 | |
CC(1/2) | 0.987 | 0.605 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 0.1 M CHES pH 9.5 and 14-20% PEG 8000 (w/v) |