8UGV
Crystal structure of the second bromodomain of human BRD2 in complex with 6IND
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 117.799, 117.799, 42.559 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.030 - 1.990 |
R-factor | 0.1776 |
Rwork | 0.176 |
R-free | 0.20650 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.860 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 1.990 | 5.430 | 1.990 |
Rmerge | 0.111 | 0.029 | 1.782 |
Rmeas | 0.117 | 0.031 | 1.856 |
Rpim | 0.035 | 0.010 | 0.516 |
Number of reflections | 20923 | 1168 | 1020 |
<I/σ(I)> | 8.7 | ||
Completeness [%] | 99.5 | 98.4 | 100 |
Redundancy | 11.2 | 10.5 | 12.2 |
CC(1/2) | 0.995 | 0.999 | 0.849 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 0.1 M TRIS-HCl pH 8.5 and 28% (v/v) PEG 550 MME |