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8UGV

Crystal structure of the second bromodomain of human BRD2 in complex with 6IND

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-03-11
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.000
Spacegroup nameP 41 21 2
Unit cell lengths117.799, 117.799, 42.559
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.030 - 1.990
R-factor0.1776
Rwork0.176
R-free0.20650
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.860
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.030
High resolution limit [Å]1.9905.4301.990
Rmerge0.1110.0291.782
Rmeas0.1170.0311.856
Rpim0.0350.0100.516
Number of reflections2092311681020
<I/σ(I)>8.7
Completeness [%]99.598.4100
Redundancy11.210.512.2
CC(1/2)0.9950.9990.849
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.52910.1 M TRIS-HCl pH 8.5 and 28% (v/v) PEG 550 MME

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