8UB2
Structure of Adenosine monophosphate/RNase A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | LIQUID ANODE |
Source details | BRUKER METALJET |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-09-05 |
Detector | Bruker PHOTON II |
Wavelength(s) | 1.3418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 101.054, 32.514, 72.935 |
Unit cell angles | 90.00, 90.81, 90.00 |
Refinement procedure
Resolution | 20.640 - 1.600 |
R-factor | 0.23803 |
Rwork | 0.237 |
R-free | 0.26238 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.489 |
Data reduction software | APEX |
Data scaling software | APEX |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.640 | 1.700 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.084 | 0.542 |
Number of reflections | 29170 | 4826 |
<I/σ(I)> | 5.47 | 1.35 |
Completeness [%] | 91.9 | 92.6 |
Redundancy | 2.25 | 1.35 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | PROTEIN WAS CRYSTALLIZED FROM 25 percent PEG 3350, 20 MM SODIUM CITRATE, PH 5.5. 5'-O-adenosine monophoshate soaking was achieved as follows. 1 uL of a stock solution of 100 mM ligand was added to 2uL of reservoir solution, to achieve a concentration of ~33 mM in the soaking solution. A few RNase A crystals were soaked for 160 - 180 minutes in the soaking solution |