8UAY
Structure of Arginyl-5'-O-adenosine phosphoramidate/RNase A
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | LIQUID ANODE |
| Source details | BRUKER METALJET |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-04-25 |
| Detector | Bruker PHOTON II |
| Wavelength(s) | 1.3418 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 99.508, 31.128, 68.575 |
| Unit cell angles | 90.00, 91.75, 90.00 |
Refinement procedure
| Resolution | 16.580 - 1.800 |
| R-factor | 0.22996 |
| Rwork | 0.227 |
| R-free | 0.28625 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.149 |
| Data reduction software | PROTEUM PLUS |
| Data scaling software | PROTEUM PLUS |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 16.760 | 1.900 |
| High resolution limit [Å] | 1.800 | 1.800 |
| Rmerge | 0.112 | 0.487 |
| Number of reflections | 19557 | 2711 |
| <I/σ(I)> | 5.72 | 1.33 |
| Completeness [%] | 98.4 | 92.6 |
| Redundancy | 4 | 2.29 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | PROTEIN WAS CRYSTALLIZED FROM 25 percent PEG 3350, 20 MM SODIUM CITRATE, PH 5.5. Arginyl-5'-O-adenosine phosphoramidate soaking was achieved as follows. 1 uL of a stock solution of 100 mM ligand was added to 2uL of reservoir solution, to achieve a concentration of ~33 mM in the soaking solution. A few RNase A crystals were soaked for 110 - 130 minutes in the soaking solution. |






