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8UAY

Structure of Arginyl-5'-O-adenosine phosphoramidate/RNase A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeLIQUID ANODE
Source detailsBRUKER METALJET
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-25
DetectorBruker PHOTON II
Wavelength(s)1.3418
Spacegroup nameC 1 2 1
Unit cell lengths99.508, 31.128, 68.575
Unit cell angles90.00, 91.75, 90.00
Refinement procedure
Resolution16.580 - 1.800
R-factor0.22996
Rwork0.227
R-free0.28625
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle1.149
Data reduction softwarePROTEUM PLUS
Data scaling softwarePROTEUM PLUS
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0419)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]16.7601.900
High resolution limit [Å]1.8001.800
Rmerge0.1120.487
Number of reflections195572711
<I/σ(I)>5.721.33
Completeness [%]98.492.6
Redundancy42.29
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5291PROTEIN WAS CRYSTALLIZED FROM 25 percent PEG 3350, 20 MM SODIUM CITRATE, PH 5.5. Arginyl-5'-O-adenosine phosphoramidate soaking was achieved as follows. 1 uL of a stock solution of 100 mM ligand was added to 2uL of reservoir solution, to achieve a concentration of ~33 mM in the soaking solution. A few RNase A crystals were soaked for 110 - 130 minutes in the soaking solution.

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