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8UAX

Structure of Alanyl-5'-O-adenosine phosphoramidate/RNase A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeLIQUID ANODE
Source detailsBRUKER METALJET
Temperature [K]100
Detector technologyPIXEL
Collection date2023-01-31
DetectorBruker PHOTON II
Wavelength(s)1.3418
Spacegroup nameC 1 2 1
Unit cell lengths100.228, 32.373, 72.639
Unit cell angles90.00, 90.32, 90.00
Refinement procedure
Resolution19.620 - 1.900
R-factor0.22055
Rwork0.218
R-free0.27317
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.641
Data reduction softwarePROTEUM PLUS
Data scaling softwarePROTEUM PLUS
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0419)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.6202.000
High resolution limit [Å]1.9001.900
Rmerge0.1230.481
Number of reflections186282613
<I/σ(I)>7.782.08
Completeness [%]99.299.2
Redundancy6.14.17
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5291PROTEIN WAS CRYSTALLIZED FROM 25 percent PEG 3350, 20 MM SODIUM CITRATE, PH 5.5. Alanyl-5'-O-adenosine phosphoramidate soaking was achieved as follows. 1 uL of a stock solution of 100 mM ligand was added to 2uL of reservoir solution, to achieve a concentration of ~35mM in the soaking solution. A few RNase A crystals were soaked for 120 - 130 minutes in the soaking solution.

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