8U6M
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(2-((6-chloro-2-cyanoindolizin-8-yl)oxy)phenoxy)ethyl)-N-methylacrylamide (JLJ751), a non-nucleoside inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-16 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 226.143, 69.736, 105.246 |
Unit cell angles | 90.00, 106.20, 90.00 |
Refinement procedure
Resolution | 37.560 - 2.620 |
R-factor | 0.2253 |
Rwork | 0.223 |
R-free | 0.26640 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.010 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 108.582 | 2.663 |
High resolution limit [Å] | 2.618 | 2.618 |
Rmerge | 0.093 | 2.399 |
Rmeas | 0.111 | 2.815 |
Rpim | 0.059 | 1.465 |
Number of reflections | 47757 | 2366 |
<I/σ(I)> | 10.1 | |
Completeness [%] | 99.9 | 100 |
Redundancy | 6.8 | |
CC(1/2) | 0.998 | 0.373 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7 | 277 | 50 mM HEPES pH 7.0, 22.5% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |