8U6J
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(5-chloro-2-((2-cyanoindolizin-8-yl)oxy)phenoxy)ethyl)-N-methylacrylamide (JLJ746), a non-nucleoside inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 224.431, 69.630, 105.065 |
Unit cell angles | 90.00, 105.89, 90.00 |
Refinement procedure
Resolution | 43.260 - 2.640 |
R-factor | 0.2406 |
Rwork | 0.239 |
R-free | 0.27390 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 0.985 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 107.926 | 2.686 |
High resolution limit [Å] | 2.640 | 2.640 |
Rmerge | 0.082 | 1.384 |
Rmeas | 0.107 | 1.823 |
Rpim | 0.068 | 1.171 |
Number of reflections | 45364 | 2319 |
<I/σ(I)> | 7.6 | 0.8 |
Completeness [%] | 98.2 | |
Redundancy | 4.2 | |
CC(1/2) | 0.997 | 0.326 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | 50 mM HEPES pH 7.0, 17.5% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |