Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8U5P

Structure of Mango II aptamer bound to T01-6A-B

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2012-07-25
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)1.10306
Spacegroup nameC 2 2 21
Unit cell lengths37.212, 183.720, 108.241
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.560 - 2.900
R-factor0.2158
Rwork0.213
R-free0.22320
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.448
Data reduction softwareXDS (Feb 5, 2021)
Data scaling softwareXDS (Feb 5, 2021)
Phasing softwarePHENIX (1.19.2_4158)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.5603.004
High resolution limit [Å]2.9002.900
Number of reflections8556840
<I/σ(I)>11.76
Completeness [%]98.3
Redundancy6.8
CC(1/2)0.9960.761
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP294HEPES sodium, polyethylene glycol 400, and ammonium acetate

246333

PDB entries from 2025-12-17

PDB statisticsPDBj update infoContact PDBjnumon