8U5J
Structure of Mango III variant aptamer bound to T01-07M-B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 55.660, 55.660, 65.715 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.870 - 1.700 |
R-factor | 0.2051 |
Rwork | 0.201 |
R-free | 0.23590 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.161 |
Data reduction software | DIALS (3.8) |
Data scaling software | DIALS (3.8) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.870 | 1.761 |
High resolution limit [Å] | 1.700 | 1.700 |
Number of reflections | 13366 | 1304 |
<I/σ(I)> | 15.29 | |
Completeness [%] | 99.6 | |
Redundancy | 17.5 | |
CC(1/2) | 0.999 | 0.953 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 0.01 M magnesium sulphate heptahydrate, 0.05 M sodium cacodylate trihydrate pH 6.0, 1.8 M lithium sulfate monohydrate |