8U0I
Crystal structure of PA0012 complexed with cyclic-di-GMP from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-02 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 1.0004 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 50.317, 50.317, 90.596 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.988 - 1.541 |
Rwork | 0.173 |
R-free | 0.21010 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 2.048 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.990 | 1.570 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmerge | 0.081 | 1.064 |
Rmeas | 0.083 | 1.080 |
Rpim | 0.013 | 0.187 |
Number of reflections | 17945 | 865 |
<I/σ(I)> | 19 | |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 39.2 | 32.9 |
CC(1/2) | 1.000 | 0.971 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293.15 | 5.3 mg/mL PA0012 and 2.5 mM cyclic-di-GMP. 0.2 M NH4SO4, 15% (w/v) PEG4000, 0.1 M Tri-NaCit pH=5.6 |