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8U0I

Crystal structure of PA0012 complexed with cyclic-di-GMP from Pseudomonas aeruginosa

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-02
DetectorDECTRIS EIGER2 S 9M
Wavelength(s)1.0004
Spacegroup nameP 43 21 2
Unit cell lengths50.317, 50.317, 90.596
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.988 - 1.541
Rwork0.173
R-free0.21010
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle2.048
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.9901.570
High resolution limit [Å]1.5401.540
Rmerge0.0811.064
Rmeas0.0831.080
Rpim0.0130.187
Number of reflections17945865
<I/σ(I)>19
Completeness [%]100.099.9
Redundancy39.232.9
CC(1/2)1.0000.971
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.6293.155.3 mg/mL PA0012 and 2.5 mM cyclic-di-GMP. 0.2 M NH4SO4, 15% (w/v) PEG4000, 0.1 M Tri-NaCit pH=5.6

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