8TYY
Structure of a bacterial Ubl-deubiquitinase complex (form 2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | F 4 3 2 |
Unit cell lengths | 214.891, 214.891, 214.891 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.300 - 1.680 |
R-factor | 0.1477 |
Rwork | 0.147 |
R-free | 0.16280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 0.963 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 124.070 | 1.710 |
High resolution limit [Å] | 1.680 | 1.680 |
Rmerge | 0.070 | 0.956 |
Number of reflections | 48723 | 2454 |
<I/σ(I)> | 35.8 | 5.2 |
Completeness [%] | 99.9 | |
Redundancy | 40.3 | |
CC(1/2) | 1.000 | 0.957 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 100 mM MES pH 6.5 and 1M sodium/potassium tartrate |