8TYX
Structure of a bacterial Ubl-deubiquitinase complex (form 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 53.338, 64.690, 141.691 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.850 - 1.360 |
R-factor | 0.1548 |
Rwork | 0.153 |
R-free | 0.17990 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.941 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.850 | 1.380 |
High resolution limit [Å] | 1.360 | 1.360 |
Rmerge | 0.058 | 0.481 |
Number of reflections | 53040 | 2551 |
<I/σ(I)> | 25 | 4 |
Completeness [%] | 99.9 | |
Redundancy | 12.7 | |
CC(1/2) | 0.999 | 0.948 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 100 mM HEPES pH 7.5, 0.2 M MgCl2, and 25% PEG 3350 |