8TWN
Crystal structure of nitrile synthase AetD with substrate bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-20 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 101.554, 101.554, 129.094 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.250 - 2.080 |
R-factor | 0.1842 |
Rwork | 0.183 |
R-free | 0.21320 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.883 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.210 |
High resolution limit [Å] | 2.080 | 2.080 |
Number of reflections | 22444 | 3470 |
<I/σ(I)> | 9.6 | |
Completeness [%] | 92.4 | |
Redundancy | 9.1 | |
CC(1/2) | 0.995 | 0.844 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 295 | 100 mM MES monohydrate pH 6.0, 20% PEG 4000, 110 mM malonic acid, 15 mM ammonium citrate tribasic, 7.2 mM succinic acid, 18 mM DL-malic acid, 24 mM sodium acetate trihydrate, 30 mM sodium formate, 9.6 mM ammonium tartrate dibasic |