8TMW
HTLV-1 capsid protein N-terminal domain triclinic crystal form with sulphate ion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-01 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 |
Unit cell lengths | 28.659, 30.604, 36.388 |
Unit cell angles | 65.62, 70.73, 72.03 |
Refinement procedure
Resolution | 32.220 - 1.710 |
R-factor | 0.2042 |
Rwork | 0.200 |
R-free | 0.24720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8ere |
RMSD bond length | 0.003 |
RMSD bond angle | 0.547 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.220 | 1.740 |
High resolution limit [Å] | 1.710 | 1.710 |
Rmerge | 0.050 | 1.571 |
Rmeas | 0.059 | 1.861 |
Rpim | 0.031 | 0.986 |
Total number of observations | 37131 | 1521 |
Number of reflections | 10396 | 475 |
<I/σ(I)> | 10.2 | 0.5 |
Completeness [%] | 91.6 | |
Redundancy | 3.6 | 3.2 |
CC(1/2) | 0.999 | 0.378 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 10% ethylene glycol, 10% PEG 8K, 0.1 M HEPES, pH7.5 |