Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8TIX

Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 5' terminal phosphates and crosslinked with EDC.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCMOS
Collection date2021-11-12
DetectorRDI CMOS_8M
Wavelength(s)1.0
Spacegroup nameI 2 2 2
Unit cell lengths74.031, 128.453, 136.808
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.020 - 2.910
R-factor0.2004
Rwork0.197
R-free0.22820
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.475
Data reduction softwareXDS (Jan 31, 2020)
Data scaling softwareXSCALE (Jan 31, 2020)
Phasing softwarePHASER (2.8.2)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.0203.014
High resolution limit [Å]2.9102.910
Rmerge0.0521.186
Rmeas0.0561.275
Rpim0.0210.465
Number of reflections145331431
<I/σ(I)>25.441.85
Completeness [%]98.499.72
Redundancy7.27.5
CC(1/2)0.9990.868
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8298350 mM MgCl2, 30% PEG 400, and 100 mM Tris HCl

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon