8TFW
FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound N34 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-30 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.972, 76.419, 73.380 |
Unit cell angles | 90.00, 90.86, 90.00 |
Refinement procedure
Resolution | 40.010 - 1.930 |
R-factor | 0.215 |
Rwork | 0.213 |
R-free | 0.26000 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.055 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.970 | 1.970 |
High resolution limit [Å] | 1.930 | 1.930 |
Rmerge | 0.135 | 1.195 |
Rmeas | 0.150 | 1.327 |
Rpim | 0.065 | 0.566 |
Total number of observations | 199549 | 13197 |
Number of reflections | 38831 | 2582 |
<I/σ(I)> | 9 | 1.3 |
Completeness [%] | 99.3 | |
Redundancy | 5.1 | 5.1 |
CC(1/2) | 0.997 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289.15 | 13uL 19 mg/ml FphE (10mM HEPES pH 7.5, 100mM NaCl) were mixed with 5uL N34 (50mM in DMSO) and incubated at 18C overnight. 0.15 ul FphE-N34 solution was mixed with 0.3 ul of reservoir solution. Sitting drop reservoir contained 25 ul of 0.18 M Magnesium chloride, 0.1 M MES pH 6.5, 22.5 % w/v Polyethylene glycol monomethyl ether 2000. Crystal was frozen in a solution of ~25% glycerol, 75% reservoir. |