8TCX
Structure of PYCR1 complexed with 2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-carboxylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 110.370, 179.400, 88.259 |
Unit cell angles | 90.00, 106.93, 90.00 |
Refinement procedure
Resolution | 91.000 - 1.720 |
R-factor | 0.1881 |
Rwork | 0.187 |
R-free | 0.21560 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.007 |
RMSD bond angle | 0.827 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 91.000 | 1.750 |
High resolution limit [Å] | 1.720 | 1.720 |
Rmerge | 0.081 | 1.355 |
Rmeas | 0.091 | 1.527 |
Rpim | 0.042 | 0.696 |
Total number of observations | 762637 | 37676 |
Number of reflections | 164433 | 8172 |
<I/σ(I)> | 10.7 | 1.1 |
Completeness [%] | 94.9 | |
Redundancy | 4.6 | 4.6 |
CC(1/2) | 0.997 | 0.569 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Reservoir contained 400 mM Li2SO4, 20% (w/v) PEG 3350, and 0.1 M HEPES at pH 7.5. Enzyme solution contained 16 mM 2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-carboxylic acid. Crystal was soaked in cryobuffer containing 0 mM Li2SO4, 20% PEG 200, and 25 mM 2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-carboxylic acid |