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8TAV

FphH, Staphylococcus aureus fluorophosphonate-binding serine hydrolases H, boronic acid-based compound N34 bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron siteAustralian Synchrotron
BeamlineMX1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-06-24
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.9537
Spacegroup nameP 43
Unit cell lengths67.381, 67.381, 55.473
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.650 - 1.390
R-factor0.1614
Rwork0.160
R-free0.18250
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.113
Data reduction softwareXDS (20220820)
Data scaling softwareAimless (0.7.8)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.6501.410
High resolution limit [Å]1.3901.390
Rmerge0.0591.807
Rmeas0.0621.880
Rpim0.0170.516
Total number of observations68262231278
Number of reflections504142430
<I/σ(I)>231.6
Completeness [%]99.9
Redundancy13.512.9
CC(1/2)1.0000.640
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5289.1513uL 10mg/ml FphH (10mM HEPES pH 7.5, 100mM NaCl) were mixed with 5uL N34 (50mM in DMSO) and incubated at RT for ~1 hour. 0.2ul FphH-N34 were mixed with 0.2ul of reservoir solution. Sitting drop reservoir contained 180mM Calcium acetate hydrate, 100mM Tris pH 7.5, 9% w/v PEG 8000 and 9% w/v PEG 1000. Crystal was frozen in a solution of ~25% Ethylenglycol, 75% reservoir.

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PDB entries from 2024-10-09

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