8T28
The crystal structure of SrtC2 sortase from Actinomyces oris
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-16 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 90.390, 90.390, 101.704 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.240 - 2.100 |
R-factor | 0.16861 |
Rwork | 0.167 |
R-free | 0.20098 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.591 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0349) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.240 | 45.240 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.124 | 0.049 | 1.156 |
Rmeas | 0.127 | 0.050 | 1.257 |
Rpim | 0.027 | 0.011 | 0.461 |
Number of reflections | 14868 | 861 | 702 |
<I/σ(I)> | 5.4 | 1.08 | |
Completeness [%] | 99.7 | 99.9 | 96.8 |
Redundancy | 20.2 | 21.5 | 6.7 |
CC(1/2) | 0.998 | 1.000 | 0.504 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 277 | 0.2 M Sodium Chloride, 0.1 M Na2HPO4:Citric Acid, 20% (w/v) PEG 8000 |