8SZ2
Stx2A1 bound to P8 stalk peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-03 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.979 |
Spacegroup name | P 63 |
Unit cell lengths | 102.349, 102.349, 92.891 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.220 - 2.010 |
R-factor | 0.1749 |
Rwork | 0.173 |
R-free | 0.21140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6x6h |
RMSD bond length | 0.007 |
RMSD bond angle | 0.788 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.070 |
High resolution limit [Å] | 2.010 | 5.510 | 2.010 |
Rmerge | 0.212 | 0.050 | 2.996 |
Rmeas | 0.218 | 0.051 | 3.077 |
Rpim | 0.049 | 0.011 | 0.700 |
Number of reflections | 36452 | 1882 | 1828 |
<I/σ(I)> | 4.1 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 19.2 | 21.8 | 18.5 |
CC(1/2) | 0.996 | 0.999 | 0.487 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.9 | 296 | 400 mM NaH2PO4 pH 4.9 and 30% PEG 400 |