Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8SY0

X-ray crystal structure of UDP- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27 in complex with its product UDP-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at pH 9

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSEALED TUBE
Source detailsBRUKER D8 QUEST
Temperature [K]100
Detector technologyPIXEL
Collection date2023-01-27
DetectorBruker PHOTON II
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths56.340, 128.608, 58.934
Unit cell angles90.00, 111.24, 90.00
Refinement procedure
Resolution40.670 - 2.100
R-factor0.18286
Rwork0.180
R-free0.23067
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.009
RMSD bond angle1.624
Data reduction softwareSAINT
Data scaling softwareSADABS
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0403)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.200
High resolution limit [Å]2.1002.100
Number of reflections451535715
<I/σ(I)>14.7
Completeness [%]99.196.9
Redundancy7.93.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9293protein incubated with 5 mM UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid 18-22% poly(ethylene glycol) 3350, 200 mM LiCl, 100 mM CHES (pH 9)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon