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8STR

Crystal Structure of HIV-1 Reverse Transcriptase (Y181C) varient in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)-4-fluorophenoxy)-7-fluoro-2-naphthonitrile (JLJ636), a non-nucleoside inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]80
Detector technologyPIXEL
Collection date2015-09-10
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.54187
Spacegroup nameC 1 2 1
Unit cell lengths161.730, 74.040, 107.830
Unit cell angles90.00, 99.09, 90.00
Refinement procedure
Resolution39.920 - 2.770
R-factor0.2416
Rwork0.240
R-free0.26790
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.461
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.38012.3902.840
High resolution limit [Å]2.7708.7602.770
Rmerge0.0470.0250.524
Rmeas0.0540.0280.610
Number of reflections321646812375
<I/σ(I)>19.873.6
Completeness [%]99.699.81
Redundancy3.93.8
CC(1/2)0.9901.0000.878
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP27750 mM MES/Imidazole/HEPES pH 6.0-7.0, 16-20% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine
1VAPOR DIFFUSION, HANGING DROP27750 mM MES/Imidazole/HEPES pH 6.0-7.0, 16-20% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine

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PDB entries from 2024-12-25

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