8STR
Crystal Structure of HIV-1 Reverse Transcriptase (Y181C) varient in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)-4-fluorophenoxy)-7-fluoro-2-naphthonitrile (JLJ636), a non-nucleoside inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2015-09-10 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54187 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 161.730, 74.040, 107.830 |
Unit cell angles | 90.00, 99.09, 90.00 |
Refinement procedure
Resolution | 39.920 - 2.770 |
R-factor | 0.2416 |
Rwork | 0.240 |
R-free | 0.26790 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.461 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.380 | 12.390 | 2.840 |
High resolution limit [Å] | 2.770 | 8.760 | 2.770 |
Rmerge | 0.047 | 0.025 | 0.524 |
Rmeas | 0.054 | 0.028 | 0.610 |
Number of reflections | 32164 | 681 | 2375 |
<I/σ(I)> | 19.87 | 3.6 | |
Completeness [%] | 99.6 | 99.81 | |
Redundancy | 3.9 | 3.8 | |
CC(1/2) | 0.990 | 1.000 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 50 mM MES/Imidazole/HEPES pH 6.0-7.0, 16-20% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine | |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 50 mM MES/Imidazole/HEPES pH 6.0-7.0, 16-20% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |