8SPP
Crystal structure of a heme enzyme RufO in rufomycin biosynthesis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 77.686, 77.686, 137.143 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.870 - 1.890 |
R-factor | 0.1948 |
Rwork | 0.192 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3r9c |
RMSD bond length | 0.006 |
RMSD bond angle | 0.836 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.920 |
High resolution limit [Å] | 1.890 | 5.130 | 1.890 |
Rmerge | 0.153 | 0.081 | 0.938 |
Rmeas | 0.157 | 0.085 | 0.962 |
Rpim | 0.036 | 0.022 | 0.204 |
Total number of observations | 664064 | ||
Number of reflections | 33478 | 1891 | 1552 |
<I/σ(I)> | 5.7 | ||
Completeness [%] | 96.7 | 97.5 | 91.9 |
Redundancy | 19.8 | 16.8 | 17.3 |
CC(1/2) | 0.986 | 0.996 | 0.947 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.2 M sodium tartrate dibasic dihydrate and 20% (w/v) polyethylene glycol 3,350 |