8SMD
Structure of Clostridium botulinum prophage Tad1 in complex with 1''-3' gcADPR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 193 |
Detector technology | PIXEL |
Collection date | 2022-10-19 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 3 |
Unit cell lengths | 95.969, 95.969, 95.969 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.920 - 2.100 |
R-factor | 0.203 |
Rwork | 0.201 |
R-free | 0.23610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7uav |
RMSD bond length | 0.001 |
RMSD bond angle | 0.392 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | AutoSol |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.920 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rpim | 0.025 | 0.698 |
Number of reflections | 17522 | 1381 |
<I/σ(I)> | 12.2 | |
Completeness [%] | 99.7 | 96.3 |
Redundancy | 13.5 | 13.3 |
CC(1/2) | 0.999 | 0.451 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | magnesium chloride, Tris-HCl pH 8.5, 1,6-hexanediol |