8SKQ
RNA oligonucleotide containing an alpha-(L)-threofuranosyl nucleic acid (TNA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-15 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9184 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 32.659, 39.775, 25.728 |
Unit cell angles | 90.00, 107.85, 90.00 |
Refinement procedure
Resolution | 19.890 - 1.350 |
R-factor | 0.2415 |
Rwork | 0.240 |
R-free | 0.27140 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.637 |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | HKL2Map |
Refinement software | PHENIX (1.19.2-4158-000) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.890 | 1.395 |
High resolution limit [Å] | 1.347 | 1.347 |
Number of reflections | 6922 | 616 |
<I/σ(I)> | 15.5 | |
Completeness [%] | 98.4 | |
Redundancy | 19.2 | |
CC(1/2) | 0.999 | 0.851 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293.15 | 1 mM RNA, 1 mM HoCl3, 5 mM spermine 4 HCl, 20 mM sodium cacodylate equilibrated against 40% MPD |