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8SKQ

RNA oligonucleotide containing an alpha-(L)-threofuranosyl nucleic acid (TNA)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-08-15
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.9184
Spacegroup nameC 1 2 1
Unit cell lengths32.659, 39.775, 25.728
Unit cell angles90.00, 107.85, 90.00
Refinement procedure
Resolution19.890 - 1.350
R-factor0.2415
Rwork0.240
R-free0.27140
Structure solution methodSAD
RMSD bond length0.009
RMSD bond angle1.637
Data reduction softwareautoPROC
Data scaling softwareAimless
Phasing softwareHKL2Map
Refinement softwarePHENIX (1.19.2-4158-000)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.8901.395
High resolution limit [Å]1.3471.347
Number of reflections6922616
<I/σ(I)>15.5
Completeness [%]98.4
Redundancy19.2
CC(1/2)0.9990.851
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7293.151 mM RNA, 1 mM HoCl3, 5 mM spermine 4 HCl, 20 mM sodium cacodylate equilibrated against 40% MPD

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PDB entries from 2024-05-15

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