8SHB
Crystal Structure of PRMT3 with Compound YD1-208
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 70.140, 70.140, 172.370 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.650 - 2.090 |
R-factor | 0.20652 |
Rwork | 0.205 |
R-free | 0.23776 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.439 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.120 |
High resolution limit [Å] | 2.080 | 5.640 | 2.080 |
Rmerge | 0.130 | 0.047 | 0.949 |
Rmeas | 0.136 | 0.050 | 0.983 |
Rpim | 0.037 | 0.015 | 0.248 |
Total number of observations | 360421 | ||
Number of reflections | 25025 | 1412 | 1239 |
<I/σ(I)> | 6.1 | ||
Completeness [%] | 95.0 | 93.8 | 95.7 |
Redundancy | 14.4 | 11.2 | 14.3 |
CC(1/2) | 0.992 | 0.998 | 0.806 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 20% PEG3350, 0.3 M Sodium formate |