8SH8
Crystal structure of SARS-CoV-2 NSP3 macrodomain Asn40Asp mutant in complex with ADP-ribose (P43 crystal form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.7749 |
Spacegroup name | P 43 |
Unit cell lengths | 88.069, 88.069, 39.071 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.390 - 0.900 |
R-factor | 0.1148 |
Rwork | 0.114 |
R-free | 0.12330 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.011 |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | XDS (Jan 10, 2022) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (dev_4788) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.390 | 0.910 |
High resolution limit [Å] | 0.900 | 0.900 |
Number of reflections | 220438 | 7138 |
<I/σ(I)> | 19.26 | 1.33 |
Completeness [%] | 99.9 | 97.42 |
Redundancy | 6.6 | 5.6 |
CC(1/2) | 1.000 | 0.620 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.5 | 292 | 100 mM CHES pH 9.5, 28% PEG 3000 |