8SBH
YeiE effector binding domain from E. coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-19 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 71.098, 71.098, 196.336 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.800 - 1.930 |
R-factor | 0.1669 |
Rwork | 0.166 |
R-free | 0.18100 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.617 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 1.960 |
High resolution limit [Å] | 1.930 | 5.240 | 1.930 |
Rmerge | 0.065 | 0.034 | 0.444 |
Rmeas | 0.078 | 0.041 | 0.534 |
Rpim | 0.043 | 0.022 | 0.291 |
Number of reflections | 38819 | 2025 | 1892 |
<I/σ(I)> | 7.6 | ||
Completeness [%] | 99.5 | 91.7 | 99.9 |
Redundancy | 3.2 | 3 | 3.2 |
CC(1/2) | 0.997 | 0.820 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 6.5 | 298 | YeiE-EBD was dialyzed into 20 mM TRIS, 10 mM mercaptolethanol, pH 8.0 . 2 mcl protein was mixed with 2 mcl Hampton Research Index cocktail 30 HR-IN-30 (0.1 M sodium chloride, 0.1 M BIS-TRIS pH 6.5, 1.5 M ammonium sulfate) |