Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8S5Y

High pH (8.0) as-isolated MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [14 MGy]

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2023-02-15
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.775
Spacegroup nameP 63
Unit cell lengths104.260, 104.260, 64.660
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.187 - 1.300
Rwork0.118
R-free0.14340
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.834
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]64.6601.320
High resolution limit [Å]1.3001.300
Rmerge0.1631.791
Rmeas0.1842.049
Rpim0.0840.969
Number of reflections981974872
<I/σ(I)>11.5
Completeness [%]100.0
Redundancy97.6
CC(1/2)0.9980.410
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8293100 mM Tris pH 7.3, 1.8 M Ammonium Sulphate

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon