8S3M
LysTt72, a lytic endopeptidase from Thermus thermophilus MAT72 phage vB_Tt72
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-28 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.7749 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.133, 60.985, 125.342 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 14.956 - 2.198 |
Rwork | 0.187 |
R-free | 0.25980 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.641 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | 2.330 |
High resolution limit [Å] | 2.198 | 2.198 |
Rmeas | 0.264 | 1.602 |
Number of reflections | 17755 | 2775 |
<I/σ(I)> | 8.36 | 1.65 |
Completeness [%] | 99.2 | 98.4 |
Redundancy | 6.5 | 6.6 |
CC(1/2) | 0.994 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 20% v/v PEG 500 MME, 10% w/v PEG 20000, 30 mM sodium nitrate, 30 mM sodium phosphate dibasic, 30 mM ammonium sulfate, 0.1 M 6.5 imidazole/MES monohydrate (acid) at pH 6.5 |